Installation Instructions
=========================

1. **Clone the repository**:

   .. code-block:: bash

      git clone https://github.com/caterer-z-t/SOM_Seq_Sim.git
      cd /path/to/SOM_Seq_Sim

2. **Create a virtual environment (optional but recommended):**

   If you're using `conda`, `mamba`, or `micromamba`, you can create the environment directly from the `env.yml` file:

   .. code-block:: bash

      conda env create -f env.yml

3. **Activate the environment using conda**:

   Replace `{conda}` with the command used to create the environment:

   .. code-block:: bash

      conda activate som-sim-env